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Rebuild Model

Base-pair parameters (Please see the [DSSR User Manual] for details)

# 12 (no. of base pairs)
#bp      Shear     Stretch    Stagger    Buckle   Propeller   Opening      Shift      Slide      Rise       Tilt       Roll       Twist
C-G     0.2760    -0.1398     0.0730     6.9298   -17.3081    -0.6058     0.0866     0.0385     3.1999    -3.2156     8.5199    32.7307
G-C    -0.2363    -0.1819     0.4909     9.3411   -14.3021    -2.0765     0.4964     0.6682     3.6907     2.8468    -9.0554    43.8789
C-G     0.2444    -0.1712     0.1587    -4.4328    -5.4046     0.4341    -0.1383     0.5933     2.9998     0.9666    11.2997    25.1144
G-C    -0.2551    -0.1148     0.0080    10.8059    -9.4487     1.0121    -0.4531    -0.1393     3.3878    -1.5850     1.3726    37.4997
A-T    -0.0371    -0.1071     0.0108     4.7238   -15.3137     1.6013     0.1713    -0.3250     3.2981    -0.3304     0.4588    37.5204
A-T     0.0514    -0.0495     0.0653     0.4421   -15.0014     6.2330    -0.0113    -0.6010     3.2186    -0.3111    -2.6749    32.4028
T-A    -0.0366    -0.1165     0.1734    -0.2639   -16.7436     3.9280    -0.0817    -0.3973     3.2156     1.6811    -0.9740    33.7441
T-A    -0.1077    -0.1204    -0.0040    -1.5612   -16.3643     5.1200    -0.2673    -0.2256     3.4655     0.6845    -1.6863    42.1361
C-G     0.2092    -0.1271     0.0030   -12.4104   -10.2744    -1.2229     0.7001     0.7758     3.0685    -3.6563     4.1800    26.5812
G-C    -0.1064    -0.0529     0.2385     4.2054    -9.6032     3.2064    -1.3106     0.3601     3.3708    -2.8525    -9.3681    41.6009
C-G     0.1561    -0.1302     0.2078     0.2832   -17.4174    -1.7549    -0.3093     0.2112     3.1742    -0.6786     6.6923    33.3104
G-C    -0.2444    -0.0691     0.2539     4.6712    -4.9538    -1.6200     999999     999999     999999     999999     999999     999999

Upload a base-pair parameter file (.txt or .par)

Example： example parameter file

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B-DNA A-DNA RNA

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